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scRNAseq

fredhutch.io's materials for single cell RNAseq analysis

scRNAseq: monocle and garnett

Class 1: Creating a CDS (Eliza)

Class 1

Class 2: Preprocessing and Creating/Manipulating UMAP/tSNE Plots (Rachel)

Class 2

Class 3: Garnett for Identification of Cells (Eliza)

Class 3

Class 4: Differential Expression Analysis and Gene Modules (Rachel)

Class 4