Reusing and troubleshooting code

Obtaining code from other people:

• StackOverflow
• GitHub
• emailed or shared by lab members

Reading code

• reading other people’s code

Testing someone else’s code

• where to start in testing someone else’s analysis?

Troubleshooting code

interpreting errors and log files

How do I figure out what’s going wrong?

Asking for help

• SciComp
• GATK forums https://gatk.broadinstitute.org/hc/en-us/community/topics
  • “Got a problem?” section
  • submitting a bug report
• other researchers at the Hutch